Education: PhD
学历：博士
Research areas：Bioinformatics
研究领域：生物信息学
Research focus：Microbiome; Evolution of life; Synthetic biology
研究方向：微生物组 生命演化 合成生物学
Current position：Postdoc, Tongji University
当前单位：博士后，同济大学
Work Experience 工作经历
· May. 2022-Present: Postdoctoral fellow, Biology, Tongji University, Shanghai, China
2022年5月至今：同济大学 生物学博士后流动站生物信息系 博士后
· May. 2021-May. 2022: Senior bioinformatics engineer, Research and Development (R&D) cencer, Research Institute, GloriousMed Clinical Laboratory Co., Ltd, Shanghai, China
2021年5月——2022年5月：上海仁东医学检验所有限公司 研究院研发中心 资深生物信息工程师
Education 教育背景
1. PhD: Jun. 2021, Bioinformatics, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, China
2015年9月——2021年6月：中国科学院上海营养与健康研究所 生物信息学专业 博士
2. BS: Jun. 2015, Bioinformatics, School of Life Sciences and Technology, Tongji University, Shanghai, China
2011年9月——2015年6月：同济大学 生命科学与技术学院生物信息学专业 本科
Publications (SCI paper: 11; first-author SCI paper: 3)
同行评议论文（发表SCI论文11篇（其中3为第一/通讯作者））
1. Sriram G Garg*†, Nils Kapust†, Weili Lin†, Michael Knopp, Fernando D K Tria, Shijulal Nelson-Sathi, Sven B Gould, Lu Fan, Ruixin Zhu, Chuanlun Zhang & William F Martin*. Anomalous Phylogenetic Behavior of Ribosomal Proteins in Metagenome-Assembled Asgard Archaea. Genome Biology and Evolution 13, doi:10.1093/gbe/evaa238 (2020).
2. Yong Wang†, Weili Lin†, Chun Li, Sarita Singhal, Gaurav Jain, Lixin Zhu, Linghui Lu, Ruixin Zhu* & Wei Wang*. Multipronged therapeutic effects of Chinese herbal medicine Qishenyiqi in the treatment of acute myocardial infarction. Frontiers in Pharmacology 8, 98 (2017).
3. Lili Yang†, Weili Lin†, Colleen A Nugent, Shijun Hao, Haiyan Song, Tao Liu* & Peiyong Zheng*. Lingguizhugan decoction protects against high-fat-diet-induced nonalcoholic fatty liver disease by alleviating oxidative stress and activating cholesterol secretion. International journal of genomics (2017).
4. Yiqin Bai, Weili Lin, Jie Xu, Jun Song, Dongshan Yang, Y Eugene Chen, Lin Li, Yixue Li*, Zhen Wang* & Jifeng Zhang*. Improving the genome assembly of rabbits with long-read sequencing. Genomics 113, 3216-3223 (2021).
5. Hong Li†, Zhen Wang†, Shumei Chai, Xiong Bai, Guohui Ding, Yuanyuan Li, Junyi Li, Qingyu Xiao, Benpeng Miao, Weili Lin, Jie Feng, Mingyue Huang, Cheng Gao, Bin Li, Wei Hu, Jiaojiao Lin, Zhiqiang Fu, Jianyun Xie* & Yixue Li*. Genome assembly and transcriptome analysis provide insights into the antischistosome mechanism of Microtus fortis. Journal of Genetics and Genomics 47, 743-755, (2020).
6. Liang Ming†, Liyun Yuan†, Li Yi†, Guohui Ding, Surong Hasi, Gangliang Chen, Tuyatsetseg Jambl, Nemat Hedayat-Evright, Mijiddorj Batmunkh, Garyaeva Khongr Badmaevna, Tudeviin Gan-Erdene, Batsukh Ts, Wenbin Zhang, Azhati Zulipikaer, Hosblig, Erdemt, Arkady Natyrov, Prmanshayev Mamay, Narenbatu, Gendalai Meng, Choijilsuren Narangerel, Orgodol Khongorzul, Jing He, Le Hai, Weili Lin, Sirendalai, Sarentuya, Aiyisi, Yixue Li*, Zhen Wang* & Jirimutu*. Whole-genome sequencing of 128 camels across Asia reveals origin and migration of domestic Bactrian camels. Communications Biology 3, 1, doi:10.1038/s42003-019-0734-6 (2020).
7. Li Yi†, Menggen Dalai†, Rina Su†, Weili Lin, Myagmarsuren Erdenedalai, Batkhuu Luvsantseren*, Chimedragchaa Chimedtseren*, Zhen Wang* & Surong Hasi*. Whole-genome sequencing of wild Siberian musk deer (Moschus moschiferus) provides insights into its genetic features. BMC genomics 21, 1-13 (2020).
8. Jian Zhang†, Junjie Liu†, Sheng Gao†, Weili Lin, Pengrong Gao, Kuo Gao, Yili Zhang, Kangjia Du, Xiaomin Yang, Wei Wang*, Ruixin Zhu* & Yong Wang*. Antiapoptosis and Antifibrosis Effects of Qishen Granules on Heart Failure Rats via Hippo Pathway. BioMed Research International 2019, 1642575, doi:10.1155/2019/1642575 (2019).
9. Weiquan Ren†, Sheng Gao†, Huimin Zhang†, Yinglu Ren, Xue Yu, Weili Lin, Shuzhen Guo*, Ruixin Zhu* & Wei Wang*. Decomposing the mechanism of Qishen granules in the treatment of heart failure by a quantitative pathway analysis method. Molecules 23, 1829 (2018).
10. Lanette Fee, Weili Lin, Feng Qiu & Robert J Edwards. Myosin II sequences for Lethocerus indicus. Journal of muscle research and cell motility 38, 193-200 (2017).
11. Ruixin Zhu, Susan S. Baker, Cynthia A. Moylan, Manal F. Abdelmalek, Cynthia D. Guy, Fausto Zamboni, Dingfeng Wu, Weili Lin, Wensheng Liu, Robert D. Baker, Sugantha Govindarajan, Zhiwei Cao, Patrizia Farci, Anna Mae Diehl* & Lixin Zhu*. Systematic transcriptome analysis reveals elevated expression of alcohol-metabolizing genes in NAFLD livers. The Journal of pathology 238, 531-542, doi:10.1002/path.4650 (2016).
Academic Conference 会议交流
1. Weili Lin, Zhen Wang & Yixue Li. Evolutionary Patterns of Long Non-coding RNAs with Coding Capacity of Oligopeptides . The American Society of Human Genetics Annual Meeting 2017. Poster. Orlando, Florida.
Patents 专利成果
1. Ge Jin, Yinge Xue, Weili Lin, Xiaohong Xu & Tingting Zhao. Method for constructing microbial subtyping and prognostic prediction model of MIBC. 2022. Patent No: ZL 202210148697.1.
金鸽, 薛银鸽, 林为丽, 徐小红 & 赵婷婷. 基于微生物丰度的MIBC分型及预后预测模型构建方法, 2022, 第3作者, 专利号: ZL 202210148697.1
Honors and Awards 获得荣誉
1. 2017, Merit Student, Chinese Academy of Sciences
2017年，中国科学院大学三好学生
2. 2015, Excellent Graduation Project Award, Tongji University (Only one place in Bioinformatics major)
2015年，同济大学校级优秀毕业设计 (生物信息学专业唯一名额)
3. 2015, Outstanding Graduate, Tongji University
2015年，同济大学优秀毕业生
4. 2014, National Scholarship
2014年，国家奖学金
5. 2014, The Excellent Prize of Students Innovation Training Program (SITP), Tongji University
2014, 同济大学校级大学生创新创业训练计划优秀奖
6. 2013, National Encouragement Scholarship
2013年，国家励志奖学金
7. 2012, Tongji University Scholarship (1st place)
2012年，同济大学一等奖学金
