Education: MS/PhD student

学历：博士在读

Research areas：Bioinformatics

研究领域：生物信息学

Research focus：Spatial multi-omics

研究方向：空间多组学

Current position：PhD student, Tongji University

当前单位：博士生，同济大学

Education 教育背景

       · PHD: Sep.2025-present, Biological Sciences, School of Life Sciences and Technology, Tongji University, Shanghai, China

2025年9月——至今：同济大学 生命科学与技术学院生物学专业 博士在读

· MS: Jun. 2024, Bioinformatics, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fujian, China

2021年9月——2024年6月：福建农林大学 海峡联合研究院生物信息学专业 硕士

· BS: Jun. 2021, Computer Science and Technology, college of medical information engineering, Guangdong Pharmaceutical University, Guangzhou, China

2017年9月——2021年6月：广东药科大学 医药信息工程计算机科学与技术专业 本科

Publications同行评议论文

1. Lin L^#, Wang H, Chen Y, Wang Y, Xu Y, Chen Z, Yang Y, Liu K, Ma X^*: STMGraph: spatial-context-aware of transcriptomes via a dual-remasked dynamic graph attention model. Briefings in Bioinformatics 2025, 26:bbae685.

2. Jingpeng Liu^#, Ximiao Shi^#, Zhitai Zhang, Lixian Lin, Xiaowei Wang, Zhongxian Chen, Yu Zhang, Xiangzi Zheng, Binghua Wu^*, Ying Miao^*, Deep Neural Network-Mining of Rice Drought-Responsive TF.TAG Modules by a Combinatorial Analysis of ATAC-Seg andRNA-Seg. Plant Cell Environ. 2025 Jul;48(7):5217-5235.

3. Wang J^#, Li J^#, Lin W^#, Lin L, Lv X, Hu Q, Liu K, Fatima M, He B, Qiu D^*, Ma X^*. Genome-wide identification and adaptive evolution of CesA/Csl superfamily among species with different life forms in Orchidaceae. Front Plant Sci. 2022 Sep 29;13:994679.

4. Huang H^#, Ji H^#, Ju S, Lin W, Li J, Lv X, Lin L, Guo L, Qiu D*, Yan J*, Ma X*. Pantranscriptome combined with phenotypic quantification reveals germplasm kinship and regulation network of bract color variation in Bougainvillea. Front Plant Sci. 2022 Nov 17;13:1018846.

5. Huang H^#, Sun Y^#, Ju S^#, Wei H^#, Rong B^#, Ma Z^#, Yang Y, Lin L, Ji H, Wu Y, Qiu D^*, Yan J^*, Ma X^*. De novo transcriptomes of floral bracts for 22 Bougainvillea accessions. Sci Data. 2025 Apr 16;12(1):645.

Honors and Awards 获得荣誉

1. 2024, Scholarship, Fujian Agriculture and Forestry University (2nd place)

2024年，福建农林大学研究生二等奖学金

2. 2023, Scholarship, Fujian Agriculture and Forestry University (2nd place)

2023年，福建农林大学研究生二等奖学金

3. 2021, Scholarship, Guangdong Pharmaceutical University (1st place)

2020年，广东药科大学一等奖学金

4. 2020, Scholarship, Guangdong Pharmaceutical University (2nd place)

2019年，广东药科大学二等奖学金

5. 2019, Scholarship, Guangdong Pharmaceutical University (2nd place)

2019年，广东药科大学二等奖学金

6. 2018, China Undergraduate Mathematical Contest in Modeling (3rd)

2018年，全国大学生数学建模竞赛三等奖